Detailed information of SNP:
|
SNP ID:
sf0314574632(Gbrowse)
Chromosome: chr03 Position: 14574632 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 87.45% | 12.55% |
| All Indica | 696 | 80.46% | 19.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 329 | 80.24% | 19.76% |
| Indica II | 183 | 76.50% | 23.50% |
| Indica Intermediate | 184 | 84.78% | 15.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314574632 | T->C | INTERGENIC | None |