Detailed information of SNP:
|
SNP ID:
sf0314574662(Gbrowse)
Chromosome: chr03 Position: 14574662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 87.60% | 12.40% |
| All Indica | 716 | 79.47% | 20.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 340 | 77.65% | 22.35% |
| Indica II | 175 | 68.00% | 32.00% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314574662 | G->A | INTERGENIC | None |