Detailed information of SNP:
|
SNP ID:
sf0314574842(Gbrowse)
Chromosome: chr03 Position: 14574842 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.99% | 38.01% |
| All Indica | 798 | 41.10% | 58.90% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314574842 | A->G | INTERGENIC | None |