Detailed information of SNP:
|
SNP ID:
sf0314579806(Gbrowse)
Chromosome: chr03 Position: 14579806 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 86.02% | 13.98% |
| All Indica | 702 | 80.34% | 19.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 32.76% | 67.24% |
| Indica I | 316 | 74.37% | 25.63% |
| Indica II | 192 | 85.42% | 14.58% |
| Indica Intermediate | 194 | 85.05% | 14.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314579806 | G->A | INTERGENIC | None |