Detailed information of SNP:
|
SNP ID:
sf0314583208(Gbrowse)
Chromosome: chr03 Position: 14583208 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1294 | 83.54% | 16.46% |
| All Indica | 696 | 75.43% | 24.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 47 | 27.66% | 72.34% |
| Indica I | 318 | 67.30% | 32.70% |
| Indica II | 180 | 86.67% | 13.33% |
| Indica Intermediate | 198 | 78.28% | 21.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314583208 | T->C | INTERGENIC | None |