Detailed information of SNP:
|
SNP ID:
sf0314591501(Gbrowse)
Chromosome: chr03 Position: 14591501 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 56.08% | 43.92% |
| All Indica | 790 | 90.00% | 10.00% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314591501 | C->T | INTERGENIC | None |