Detailed information of SNP:
|
SNP ID:
sf0314621035(Gbrowse)
Chromosome: chr03 Position: 14621035 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 82.64% | 17.36% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 478 | 50.42% | 49.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 30.31% | 69.69% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314621035 | C->T | INTERGENIC | None |