Detailed information of SNP:
|
SNP ID:
sf0314621639(Gbrowse)
Chromosome: chr03 Position: 14621639 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 82.91% | 17.09% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 51.24% | 48.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314621639 | A->G | INTERGENIC | None |