Detailed information of SNP:
|
SNP ID:
sf0314625614(Gbrowse)
Chromosome: chr03 Position: 14625614 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 77.54% | 22.46% |
| All Indica | 754 | 67.64% | 32.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 52 | 15.38% | 84.62% |
| Indica I | 352 | 69.89% | 30.11% |
| Indica II | 197 | 48.22% | 51.78% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314625614 | T->A | INTERGENIC | None |