Detailed information of SNP:
|
SNP ID:
sf0314637460(Gbrowse)
Chromosome: chr03 Position: 14637460 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 90.65% | 9.35% |
| All Indica | 759 | 84.06% | 15.94% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 79.49% | 20.51% |
| Indica II | 203 | 88.67% | 11.33% |
| Indica Intermediate | 200 | 87.50% | 12.50% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314637460 | G->A | LOC_Os03g25580(LOC_Os03g25580.1) | Synonymous |