Detailed information of SNP:
|
SNP ID:
sf0314637807(Gbrowse)
Chromosome: chr03 Position: 14637807 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 91.58% | 8.42% |
| All Indica | 759 | 87.88% | 12.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 71.93% | 28.07% |
| Indica I | 357 | 91.04% | 8.96% |
| Indica II | 200 | 78.50% | 21.50% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314637807 | C->T | LOC_Os03g25580(LOC_Os03g25580.1) | Non-Synonymous SNP |