Detailed information of SNP:
|
SNP ID:
sf0314642859(Gbrowse)
Chromosome: chr03 Position: 14642859 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 91.76% | 8.24% |
| All Indica | 779 | 88.19% | 11.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 369 | 89.70% | 10.30% |
| Indica II | 202 | 80.69% | 19.31% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314642859 | T->G | LOC_Os03g25590(LOC_Os03g25590.1) | Non-Synonymous SNP |