Detailed information of SNP:
|
SNP ID:
sf0314642868(Gbrowse)
Chromosome: chr03 Position: 14642868 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 89.96% | 10.04% |
| All Indica | 779 | 86.01% | 13.99% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 367 | 87.74% | 12.26% |
| Indica II | 203 | 77.34% | 22.66% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314642868 | G->A | LOC_Os03g25590(LOC_Os03g25590.1) | Non-Synonymous SNP |