Detailed information of SNP:
|
SNP ID:
sf0314644499(Gbrowse)
Chromosome: chr03 Position: 14644499 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 82.46% | 17.54% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 477 | 50.10% | 49.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 29.69% | 70.31% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314644499 | C->T | LOC_Os03g25590(LOC_Os03g25590.1) | INTRON |