Detailed information of SNP:
|
SNP ID:
sf0314644707(Gbrowse)
Chromosome: chr03 Position: 14644707 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 92.26% | 7.74% |
| All Indica | 738 | 89.57% | 10.43% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 59 | 62.71% | 37.29% |
| Indica I | 347 | 91.07% | 8.93% |
| Indica II | 186 | 80.65% | 19.35% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314644707 | C->T | LOC_Os03g25590(LOC_Os03g25590.1) | INTRON |