Detailed information of SNP:
|
SNP ID:
sf0314644797(Gbrowse)
Chromosome: chr03 Position: 14644797 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314644797 | A->G | LOC_Os03g25590(LOC_Os03g25590.1) | INTRON |