Detailed information of SNP:
|
SNP ID:
sf0314671028(Gbrowse)
Chromosome: chr03 Position: 14671028 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 94.24% | 5.76% |
| All Indica | 771 | 91.05% | 8.95% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 357 | 92.16% | 7.84% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314671028 | G->A | LOC_Os03g25620(LOC_Os03g25620.1) | INTRON |