Detailed information of SNP:
|
SNP ID:
sf0314682264(Gbrowse)
Chromosome: chr03 Position: 14682264 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 79.62% | 20.38% |
| All Indica | 783 | 72.92% | 27.08% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 364 | 76.37% | 23.63% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314682264 | G->T | INTERGENIC | None |