Detailed information of SNP:
|
SNP ID:
sf0314682339(Gbrowse)
Chromosome: chr03 Position: 14682339 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 77.80% | 22.20% |
| All Indica | 790 | 69.87% | 30.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 369 | 71.54% | 28.46% |
| Indica II | 210 | 54.76% | 45.24% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314682339 | C->T | INTERGENIC | None |