Detailed information of SNP:
|
SNP ID:
sf0314686436(Gbrowse)
Chromosome: chr03 Position: 14686436 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 81.73% | 18.27% |
| All Indica | 782 | 75.70% | 24.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 366 | 78.69% | 21.31% |
| Indica II | 210 | 61.43% | 38.57% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314686436 | T->C | LOC_Os03g25650(LOC_Os03g25650.1) | INTRON |