Detailed information of SNP:
|
SNP ID:
sf0314686481(Gbrowse)
Chromosome: chr03 Position: 14686481 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 78.94% | 21.06% |
| All Indica | 795 | 70.94% | 29.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 71.93% | 28.07% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314686481 | A->G | LOC_Os03g25650(LOC_Os03g25650.1) | INTRON |