Detailed information of SNP:
|
SNP ID:
sf0314695062(Gbrowse)
Chromosome: chr03 Position: 14695062 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 83.59% | 16.41% |
| All Indica | 781 | 93.21% | 6.79% |
| All Japonica | 479 | 68.48% | 31.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 200 | 90.00% | 10.00% |
| Temperate Japonica | 324 | 91.05% | 8.95% |
| Tropical Japonica | 89 | 16.85% | 83.15% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314695062 | A->G | LOC_Os03g25670(LOC_Os03g25670.1) | Non-Synonymous SNP |