Detailed information of SNP:
|
SNP ID:
sf0314701659(Gbrowse)
Chromosome: chr03 Position: 14701659 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 68.36% | 31.64% |
| All Indica | 780 | 47.18% | 52.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 369 | 44.72% | 55.28% |
| Indica II | 201 | 44.78% | 55.22% |
| Indica Intermediate | 210 | 53.81% | 46.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314701659 | T->C | INTERGENIC | None |