Detailed information of SNP:
|
SNP ID:
sf0314709830(Gbrowse)
Chromosome: chr03 Position: 14709830 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 75.73% | 24.27% |
| All Indica | 787 | 59.59% | 40.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 369 | 53.12% | 46.88% |
| Indica II | 207 | 68.60% | 31.40% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314709830 | G->A | LOC_Os03g25700(LOC_Os03g25700.1) | Non-Synonymous SNP |