Detailed information of SNP:
|
SNP ID:
sf0314710808(Gbrowse)
Chromosome: chr03 Position: 14710808 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 75.78% | 24.22% |
| All Indica | 794 | 59.57% | 40.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 373 | 53.62% | 46.38% |
| Indica II | 210 | 68.57% | 31.43% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314710808 | C->G | LOC_Os03g25700(LOC_Os03g25700.1) | Non-Synonymous SNP |