Detailed information of SNP:
|
SNP ID:
sf0314717901(Gbrowse)
Chromosome: chr03 Position: 14717901 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 83.54% | 16.46% |
| All Indica | 771 | 71.34% | 28.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 66.57% | 33.43% |
| Indica II | 205 | 80.49% | 19.51% |
| Indica Intermediate | 204 | 70.59% | 29.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314717901 | C->A | LOC_Os03g25710(LOC_Os03g25710.1) | Synonymous |