Detailed information of SNP:
|
SNP ID:
sf0314725690(Gbrowse)
Chromosome: chr03 Position: 14725690 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.01% | 26.99% |
| All Indica | 799 | 64.33% | 35.67% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314725690 | T->C | INTERGENIC | None |