Detailed information of SNP:
|
SNP ID:
sf0314725857(Gbrowse)
Chromosome: chr03 Position: 14725857 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.48% | 26.52% |
| All Indica | 798 | 65.29% | 34.71% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314725857 | C->T | INTERGENIC | None |