Detailed information of SNP:
|
SNP ID:
sf0314726343(Gbrowse)
Chromosome: chr03 Position: 14726343 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.41% | 4.59% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 482 | 88.80% | 11.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 90 | 55.56% | 44.44% |
| Japonica Intermediate | 61 | 83.61% | 16.39% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314726343 | G->A | INTERGENIC | None |