Detailed information of SNP:
|
SNP ID:
sf0314727030(Gbrowse)
Chromosome: chr03 Position: 14727030 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 85.33% | 14.67% |
| All Indica | 782 | 96.16% | 3.84% |
| All Japonica | 445 | 66.74% | 33.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 292 | 89.38% | 10.62% |
| Tropical Japonica | 88 | 15.91% | 84.09% |
| Japonica Intermediate | 65 | 33.85% | 66.15% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314727030 | T->C | INTERGENIC | None |