Detailed information of SNP:
|
SNP ID:
sf0314738071(Gbrowse)
Chromosome: chr03 Position: 14738071 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 96.33% | 3.67% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314738071 | C->A | LOC_Os03g25760(LOC_Os03g25760.1) | Synonymous |