Detailed information of SNP:
|
SNP ID:
sf0314744098(Gbrowse)
Chromosome: chr03 Position: 14744098 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.81% | 25.19% |
| All Indica | 797 | 62.99% | 37.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314744098 | C->T | INTERGENIC | None |