Detailed information of SNP:
|
SNP ID:
sf0314747378(Gbrowse)
Chromosome: chr03 Position: 14747378 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1289 | 72.92% | 27.08% |
| All Indica | 756 | 94.97% | 5.03% |
| All Japonica | 413 | 29.78% | 70.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 180 | 86.67% | 13.33% |
| Temperate Japonica | 264 | 37.88% | 62.12% |
| Tropical Japonica | 89 | 13.48% | 86.52% |
| Japonica Intermediate | 60 | 18.33% | 81.67% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314747378 | T->C | INTERGENIC | None |