Detailed information of SNP:
|
SNP ID:
sf0314750637(Gbrowse)
Chromosome: chr03 Position: 14750637 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.33% | 3.67% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314750637 | C->T | LOC_Os03g25770(LOC_Os03g25770.2) | Non-Synonymous SNP |
| sf0314750637 | C->T | LOC_Os03g25770(LOC_Os03g25770.1) | Non-Synonymous SNP |