Detailed information of SNP:
|
SNP ID:
sf0314768178(Gbrowse)
Chromosome: chr03 Position: 14768178 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 75.68% | 24.32% |
| All Indica | 790 | 69.49% | 30.51% |
| All Japonica | 493 | 84.18% | 15.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 67.39% | 32.61% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 206 | 64.56% | 35.44% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314768178 | C->A | INTERGENIC | None |