Detailed information of SNP:
|
SNP ID:
sf0314788445(Gbrowse)
Chromosome: chr03 Position: 14788445 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 66.24% | 33.76% |
| All Indica | 799 | 60.33% | 39.67% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 45.87% | 54.13% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314788445 | A->G | LOC_Os03g25850(LOC_Os03g25850.1) | Synonymous |