Detailed information of SNP:
|
SNP ID:
sf0314813067(Gbrowse)
Chromosome: chr03 Position: 14813067 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.69% | 35.31% |
| All Indica | 799 | 59.32% | 40.68% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314813067 | C->G | INTERGENIC | None |