Detailed information of SNP:
|
SNP ID:
sf0314823855(Gbrowse)
Chromosome: chr03 Position: 14823855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.91% | 30.09% |
| All Indica | 799 | 66.21% | 33.79% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314823855 | C->T | INTERGENIC | None |