Detailed information of SNP:
|
SNP ID:
sf0314823930(Gbrowse)
Chromosome: chr03 Position: 14823930 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 67.59% | 32.41% |
| All Indica | 793 | 62.67% | 37.33% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 369 | 50.41% | 49.59% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314823930 | C->T | INTERGENIC | None |