Detailed information of SNP:
|
SNP ID:
sf0314828694(Gbrowse)
Chromosome: chr03 Position: 14828694 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 60.84% | 39.16% |
| All Indica | 797 | 41.53% | 58.47% |
| All Japonica | 492 | 87.20% | 12.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 56.27% | 43.73% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 210 | 21.90% | 78.10% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314828694 | C->G | INTERGENIC | None |