Detailed information of SNP:
|
SNP ID:
sf0314846552(Gbrowse)
Chromosome: chr03 Position: 14846552 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 66.76% | 33.24% |
| All Indica | 794 | 60.83% | 39.17% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 47.58% | 52.42% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314846552 | A->G | INTERGENIC | None |