Detailed information of SNP:
|
SNP ID:
sf0314859093(Gbrowse)
Chromosome: chr03 Position: 14859093 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.27% | 35.73% |
| All Indica | 797 | 57.47% | 42.53% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 42.25% | 57.75% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314859093 | G->T | LOC_Os03g25945(LOC_Os03g25945.1) | UTR_3_PRIME |