Detailed information of SNP:
|
SNP ID:
sf0314860139(Gbrowse)
Chromosome: chr03 Position: 14860139 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.94% | 40.06% |
| All Indica | 796 | 43.09% | 56.91% |
| All Japonica | 495 | 85.66% | 14.34% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 36.53% | 63.47% |
| Indica II | 212 | 33.02% | 66.98% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314860139 | G->A | INTERGENIC | None |