Detailed information of SNP:
|
SNP ID:
sf0314861113(Gbrowse)
Chromosome: chr03 Position: 14861113 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 798 | 43.36% | 56.64% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 37.87% | 62.13% |
| Indica II | 212 | 32.55% | 67.45% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314861113 | T->C | INTERGENIC | None |