Detailed information of SNP:
|
SNP ID:
sf0314862735(Gbrowse)
Chromosome: chr03 Position: 14862735 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 81.91% | 18.09% |
| All Indica | 793 | 78.18% | 21.82% |
| All Japonica | 494 | 86.64% | 13.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314862735 | G->A | LOC_Os03g25950(LOC_Os03g25950.1) | INTRON |