Detailed information of SNP:
|
SNP ID:
sf0314872584(Gbrowse)
Chromosome: chr03 Position: 14872584 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 86.62% | 13.38% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 468 | 61.32% | 38.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 44.44% | 55.56% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314872584 | T->C | LOC_Os03g25970(LOC_Os03g25970.1) | Non-Synonymous SNP |
| sf0314872584 | T->C | LOC_Os03g25970(LOC_Os03g25970.2) | Non-Synonymous SNP |