Detailed information of SNP:
|
SNP ID:
sf0314882514(Gbrowse)
Chromosome: chr03 Position: 14882514 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.06% | 22.94% |
| All Indica | 797 | 77.42% | 22.58% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 209 | 70.33% | 29.67% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314882514 | C->T | INTERGENIC | None |