Detailed information of SNP:
|
SNP ID:
sf0314882682(Gbrowse)
Chromosome: chr03 Position: 14882682 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 82.51% | 17.49% |
| All Indica | 795 | 77.74% | 22.26% |
| All Japonica | 478 | 89.54% | 10.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 79 | 51.90% | 48.10% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314882682 | T->C | INTERGENIC | None |