Detailed information of SNP:
|
SNP ID:
sf0314882744(Gbrowse)
Chromosome: chr03 Position: 14882744 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.96% | 19.04% |
| All Indica | 798 | 77.44% | 22.56% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314882744 | C->T | INTERGENIC | None |