Detailed information of SNP:
|
SNP ID:
sf0314890456(Gbrowse)
Chromosome: chr03 Position: 14890456 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 86.50% | 13.50% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 440 | 59.32% | 40.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 42.07% | 57.93% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 60 | 85.00% | 15.00% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314890456 | G->A | INTERGENIC | None |